Combining Lens Data Files

As noted in the settings of gravelamps_generate_lens, it is capable of producing multiple jobs to generate files. To use these generated files they must be combined. Combination of these files is handled by the gravelamps_combine_lens entrypoint. This is not typically ran by the user directory, but instead is generated as jobs to a scheduler by gravelamps_generate_lens or gravelamps_inference. However, if needed to be run manually, it can be done so as follows:

$ gravelamps_combine_lens --options --data-dict path --pattern pattern-string

This will search the path folder for files with a pattern including pattern-string that end with -n where n is a series of ascending integers beginning with 1. If the pattern is insufficient to yield a unique result, the program will not attempt to disambiguate and will return an error to the user.

Commandline Options

Required

--data-dict

Path to search for files to combine.

--pattern

Pattern to identify files to combine.

Optional

-h, --help

Shows the help message and exists

--logdir

Folder to output logging information. If not set, will not save logging information to file.

--loglevel

Name of the level of logging messages that should be output to stdout. Default is INFO.